Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX2598877: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Kentucky by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 549.7M bases, 321.9Mb downloads

External Id: EXT00245579

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: Washington State University

PRJNA336192 • SRP082492 • All experiments • All runs

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Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.

Sample:

SAMN06051838 • SRS1862033 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Kentucky

Library:

Name: Salmonella enterica subsp. enterica serovar Kentucky Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Kentucky.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 1.2M spots, 549.7M bases, 321.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR5296609	1,242,437	549.7M	321.9Mb	2017-02-28

ID:: 3761514

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